Dan's Publications in our lab
- Glasgow AA*, Huang YM*, Mandell DJ*, Thompson M, Ritterson R, Loshbaugh AL, Pellegrino J, Krivacic C, Pache RA, Barlow KA, Ollikainen N, Jeon D, Kelly MJS, Fraser JS, Kortemme T. Computational design of a modular protein sense-response system. Science. 2019 Nov 22;366(6468):1024-1028. doi: 10.1126/science.aax8780. *co-first author
- Chao, LH, Stratton, MM, Lee, I, Rosenberg, OS, Levitz, J, Mandell, DJ, Kortemme, T, Groves, JT, Schulman, H, Kuriyan, J. A Mechanism for Tunable Autoinhibition in the Structure of a Human Ca2+/Calmodulin- Dependent Kinase II Holoenzyme. Cell 146(5):732-45, 2011. doi: 10.1016/j.cell.2011.07.038
- Babor, M, Mandell, DJ, Kortemme, T. Assessment of flexible backbone protein design methods for sequence library prediction in the therapeutic antibody Herceptin–HER2 interface. Protein Sci 20(6):1082-9, 2011. doi: 10.1002/pro.632
- Leaver-Fay, A, Tyka, M, Lewis, SM, Lange, OF, Thompson, J, Jacak, R, Kaufman, KW, Renfrew, PD, Smith, CA, Sheffler, W, Davis, IW, Cooper, S, Treuille, A, Mandell, DJ, Richter, F, Ban, YA, Fleishman, SJ, Corn, JE, Kim, DE, Lyskov, S, Berrondo, M, Mentzer, S, Popović, Z, Havranek, JJ, Karanicolas, J, Das, R, Meiler, J, Kortemme, T, Gray, JJ, Kuhlman, B, Baker, D, Bradley, P. Chapter nineteen - Rosetta3: An Object-Oriented Software Suite for the Simulation and Design of Macromolecules in Methods in Enzymology Volume 487 (Computer Methods, Part C):545-74, 2011. doi: 10.1016/B978-0-12-381270-4.00019-6
- Mandell, DJ, Kortemme, T. Computer-aided design of functional protein interactions. Nat Chem Biol 5(11):797-807, 2009. doi: 10.1038/nchembio.251
- Mandell, DJ, Kortemme, T. Backbone flexibility in computational protein design. Curr Opin Biotechnol 20 (Protein technologies / Systems and synthetic biology)(4):420-8, 2009. doi:10.1016/j.copbio.2009.07.006
- Mandell, DJ, Coutsias, EA, Kortemme, T. Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling. Nat Methods 6(8):551-2, 2009. doi:10.1038/nmeth0809-551