KORTEMME LAB @ UCSF
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LAB ALUMNI

Graduate Students

 
Years
Post graduation
Current position
Picture
​Cody Krivacic, PhD
2017-2022
​Evercrisp Biosciences
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Chris Mathy, PhD
2017-2022
Postdoc, Stanford
Xingjie Pan
Xingjie Pan, PhD
2015-2020
Postdoc, Harvard
Samuel Thompson
​Samuel Thompson, PhD
2014-2020
Postdoc, Stanford and University of Washington
James Lucas
James Lucas, PhD
2016-2020
Protein Design Scientist, Nautilus Biotechnology​
Scientist, Generate Biomedicines, Inc.
Amanda Loshbaugh
​Amanda Loshbaugh, PhD
2013-2019
Scientist, Lyell Immunopharma
Protein Engineering Scientist, Cyrus Biotechnology
Kale Kundert
Kale Kundert, PhD
2012-2019
Postdoc, Harvard
Pradeep Bandaru
Pradeep Bandaru, PhD
2013-2017
Postdoc, Stanford
Data Scientist, Palantir Technologies
Kyle Barlow
Kyle Barlow, PhD
2012-2017
Scientist, Adimab, LLC
Laurens Kraal
Laurens Kraal, PhD
2010-2016
Director, uBiome
Head of Product, DeepX Health
Ryan Ritterson
Ryan Ritterson, PhD
2007-2015
​Intern, Gryphon Scientific LLC
​Executive Vice President, Research & Partner, Gryphon Scientific LLC
Noah Ollikainen
Noah Ollikainen, PhD
2008-2015
ACS Postdoctoral Fellow, CalTech
Staff Scientist, National Institute on Aging
Rich Oberdorf
Rich Oberdorf, PhD
2006-2011
Consultant, Ab Initio Software Corporation
Colin Smith
Colin Smith, PhD
2006-2011
Humboldt Postdoctoral Fellow, Max Planck Institute
Assistant Professor, Wesleyan University
Dan Mandell
Dan Mandell, PhD
2005-2011
​LSRF Postdoctoral Fellowship, Harvard University
Co-founder and CEO, GRO Biosciences
Matt Eames
Matt Eames, PhD
2005-2011
Postdoc, NYU
Writer and Director, Consultant Cognition IP, Multimedia Producer Northeastern University
Elisabeth Humphris
Elisabeth (Humphris) Narayanan, PhD
2005-2009
​NIH N32 Postdoctoral Fellow, Yale
Associate Scientific Director, Moderna
Greg Friedland
Greg Friedland, PhD
2004-2008
Postdoc, UC Berkeley/LBNL
Head of Software, Atomwise
David Lomelin
David Lomelin
2004-2006
BMI graduate program, UCSF
Software Engineer, Synthetic Genomics

Postdoctoral Fellows

 
 
Years
Current position
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Robert Alberstein, PhD
​2020-2022
Structural & Computational Biologist at Prescient Design, Genentech
Tina Perica
Benjamin Jagger, PhD
2020-2021
Principal Scientist, Evercrisp Biosciences
Tina Perica
Anum Azam Glasgow, PhD
2017-2021
Assistant Professor, Columbia University Medical Center

​Lab Page
Tina Perica
Tina Perica, PhD
2014-2021
Assistant Professor, University of Zurich, Switzerland
Yao-ming Huang
Yao-ming Huang, PhD
2011-2016
Senior Scientist, 23andMe
Lin Liu
Lin Liu, PhD
2011-2015
Senior Scientist, Remegen
Amelie Stein
 Amelie Stein, PhD
2011-2015
Assistant Professor, University of Copenhagen, Denmark
Roland Pache
Roland Pache, PhD
2011-2015
Scientist, Novozymes, Denmark
Daniel Hoersch
Daniel Hoersch, PhD
2010-2015
Fellow, Free University Berlin​, Germany
Eyal Akiva
Eyal Akiva, PhD
2010-2011
Scientist, Shiru
Sen Liu
Sen Liu, PhD
2008-2010
Professor, Hubei University of Technology (HUBT), China
Mariana Babor
Mariana Babor, PhD
2006-2009
Senior Manager, DarwinHealth
Greg Kapp
Greg Kapp, PhD
2004-2009
Associate Director, Nautilus Biotechnology​
  
Lauren Baugh, PhD
2004-2005
Postdoc, University of Washington, Seattle

Staff

 
 
Years
Current position

Shane O'Connor
Yang (Sunny) Zhang, PhD
2017-2021
Senior Protein Scientist, BigHat Bio
Shane O'Connor
Shane O'Connor, PhD
2011-2016
Software Engineer, Kitman Labs
Joslyn Polzien
Joslyn Polzien
2012-2015
Finance Manager, UCSF
Debbie Jeon
Debbie Jeon
2009-2013
MD Program, George Washington University
Christina Melero
Cristina Melero, MSc
2004-2012
Ashley Custer
2010-2012
Graduate program,
​Boston University
Florian Lauck
Florian Lauck, MSc
2008-2010
Software Engineer, Evotec

Undergraduate Students

 
 
Years
Next step

  
Alejandra Del Castillo Valerio
2021
Undergraduate, Georgia Institute of Technology
  
Hyery Yoo
2021
Undergraduate, Amherst College
Muziyue Wu
Muziyue Wu
2018-2020
Graduate Student, Weiner Lab UCSF
  
Zion Perry
2019
Graduate Student, Yale
  
Emily Hinds
2017
Graduate Student, University of Chicago
  
Shivani Mathur
2016-2018
Undergraduate, UC Berkeley
  
Eder Davila Contreras
2015
Undergraduate,
​University of Kansas
  
Victor Ruiz​
2012
Pharmacology Graduate Program, Yale
  
Michael Michalik
2009-2010
Graduate Program,
​University of Bonn, Germany
  
Thomas Bliska
2010
Undergraduate,
​Williams College
  
Aaron Nichols
​

2010
Undergraduate, UC Riverside
  
Matt Chroust
2009
Dentistry Graduate Program, UCSF
  
Catherine Shi
​
2008
IPQB graduate program, UCSF
  
Anthony Linares
​
2006-2007
MD/PhD program, UCLA

High school Students

 
 
Years
Next step

  
Kianna Zucker
2017
The College Preparatory School, Oakland
  
Flora Yi
2009
El Camino High School,
​San Francisco

Past rotation students

Stephanie Ouchida, CCB, Winter 2022
Jonathan Zhang, Biophysics, Winter 2022
Philipp Huettemann, Tetrad, Fall 2021
Nick Perry, Bioengineering, Spring 2021
Rian Kormos, Biophysics, Winter 2021
Hailey Wallace, Biophysics, Winter 2021
Laura Shub, BMI, Spring 2020
Gabby Rabadam, Bioengineering, Winter 2020
Wilson Nieves Vasquez, Biophysics, Fall 2019
Sita Chandrasekaran, Bioengineering, Summer 2019
Maru Jaime Garza, Biophysics, Winter 2019
Christina Stephens, Biophysics, Winter 2019
Nick Hoppe, Biophysics, Fall 2018
Annie Maslan, Bioengineering, Winter 2018
Jenna Pellegrino, Biophysics, Winter 2018
Erik Navarro, Biophysics, Fall 2017
Yessica Gomez, Biophysics, Fall 2017
Alison Maxwell, CCB, Spring 2017
Zeynip Ali, Bioengineering, Winter 2017
Allison Su, Bioengineering, Winter 2017
Gabe Reder, Biophysics, Fall 2016
Andrew Natale, Biophysics, Fall 2016
Sophia Tan, Biophysics, Summer 2016
Tianjiao Zhang, Bioengineering, Winter 2016
Cole Helsell, Biophysics, Fall 2015
Pooja Suresh, Biophysics, Fall 2015
Marco Mravic, Biophysics, Winter 2015
Dominic Tong, Bioengineering, Winter 2015
Seth Axen, BMI, Fall 2014
Reid Stein, PSPG, Fall 2014
Benjamin Adler, Bioengineering, Summer 2014
Aditya Anand, Tetrad, Summer 2014
​Justin Biel, Biophysics, Winter 2014
Kevin Hartman, Bioinformatics, Winter 2014
Rebecca Davidson, Biophysics, Winter 2013
Russell Goodman, Biophysics, Winter 2012
Lawrence Uricchio, Bioengineering, Winter 2012
Leo Gendelev, Biophysics, Summer 2012
Alec Nielsen, Biophysics, Winter 2011
David Mavor, Biophysics, Summer 2011
Joel Karpiak, CCB, Winter 2010
Geoff Rollins, Biophysics, Winter 2009
Rocco Varela, BMI, Winter 2009
Ian Vaughn, Biophysics, Fall 2009
Elaine Kirshke, Biophysics, Winter 2008
Charles Kehoe, BMI, Winter 2008
Roxana Ordonez, BMI, Summer 2008
Jaline Gerardin, Biophysics, Fall 2007
Alvin Tamsir, Tetrad, Spring 2007
Reid Williams, Biophysics, Fall 2006
Dan Gray, CCB, Fall 2006
Sheel Dandekar, Biophysics, Spring 2006
Michael Hicks, PSPG, Winter 2005
Kareen Riviere, PSPG, Winter 2005
Chris McClendon, Biophysics, Fall 2005
Ian Harwood, Biophysics, Spring 2005
Mike Keiser, BMI, Fall 2004
  • Home
  • Research
    • Computational Protein Design and Modeling
    • Control of Biological Systems
    • Evolution of Structure, Function, and Network Interactions
  • People
    • Current Members
    • Lab Alumni
    • Join the Lab
  • Publications
  • News
  • Gallery
  • Contact
    • Meetings
    • Directions
  • Rosetta
  • Link Page
  • Our Wiki
  • Benchmarks